PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG262700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 96aa    MW: 11218 Da    PI: 9.9684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG262700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.62.2e-182268455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Pavir.7NG262700.2.p 22 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 68
                         59*************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-201576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-222193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-162172No hitNo description
PfamPF000101.1E-152268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-182473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEDGSVPRRS TPPTRRSRSA EFHNFSERRR RDRINEKLKA LQELLPNCTK TDKVSMLDEA  60
IDYLKSLQLQ LQMLVMGKGM APVVPPELQQ YMHYIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.317751e-163callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524834e-95EU952483.1 Zea mays clone 1281977 protein SPATULA mRNA, complete cds.
GenBankEU9542884e-95EU954288.1 Zea mays clone 1461253 protein SPATULA mRNA, complete cds.
GenBankKJ7277474e-95KJ727747.1 Zea mays clone pUT5688 bHLH transcription factor (bHLH148) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447108.12e-63hypothetical protein SORBIDRAFT_06g028750
SwissprotO805366e-31PIF3_ARATH; Transcription factor PIF3
TrEMBLK3YC159e-65K3YC15_SETIT; Uncharacterized protein
STRINGSi011759m3e-64(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-29phytochrome interacting factor 3